Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865662:139865681:[+] chr5:31435923:31435942:[-] nonBSJ supported CDS

circRNA 5':AGCUAAUCCAUG-UCUUCCAG 3'


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target  3':ACGAUUAGGAGGAAGAAGGU 5'

 -22.80 2 RIC-seq
chrX:139866580:139866603:[+] chr5:31435923:31435942:[-] nonBSJ supported CDS

circRNA 5':AGCUACGUCUUCCAACAAAUCCAU 3'


            |||| :||:||| | ||||


target  3':ACGAU-UAGGAGGAAGA--AGGU 5'

 -16.80 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:31435923:31435942:[-] target 3393491 chr5:31435926-31435927 T>G Pineoblastoma ClinVar
chrX:139866580:139866603:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC