Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865364:139865399:[+] chr5:80369048:80369081:[+] nonBSJ supported CDS

circRNA 5':GGUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCA 3'


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target  3':ACAUUAGGACGUGCUA--CCAGAAGGUAAAGGAAGA 5'

 -26.60 15 RIC-seq
chrX:139865365:139865399:[+] chr5:80369048:80369081:[+] nonBSJ supported CDS

circRNA 5': GUCUUCCAACAACUCCGGGUCUUCCAGCGACUUCA 3'


            || ||| || ||||||||| ||||


target  3':ACAUUAGGACGUGCUA--CCAGAAGGUAAAGGAAGA 5'

 -26.90 2 RIC-seq
chrX:139866284:139866319:[+] chr5:80409588:80409615:[+] nonBSJ supported CDS

circRNA 5':UCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUAGCU 3'


            |||| ||| | :|||


target  3':UGGUC--------ACACACCACCACCUCUGCGUCGC 5'

 -6.40 1 RIC-seq
chrX:139866329:139866345:[+] chr5:80409596:80409615:[+] nonBSJ supported CDS

circRNA 5':UCCAG-GUCUUCCA--GGAA 3'


            |||| || |||


target  3':UGGUCACACACCACCACCUC 5'

 -7.20 1 RIC-seq
chrX:139866338:139866362:[+] chr5:80409588:80409615:[+] nonBSJ supported CDS

circRNA 5':UCCAGGAAAUCC--GUGUCUUC-CAGCA 3'


            |||| ||| | ||||


target  3':UGGUCACACACCACCACCUCUGCGUCGC 5'

 -12.10 8 RIC-seq
chrX:139866339:139866362:[+] chr5:80409588:80409613:[+] nonBSJ supported CDS

circRNA 5':CCAGGAAAUCC--GUGUCUUC-CAGCA 3'


            ||| ||| | ||||


target  3': GUCACACACCACCACCUCUGCGUCGC 5'

 -8.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:80409588:80409613:[+] target - chr5:80409594-80409595 G>A BTCA-JP ICGC
chr5:80409588:80409615:[+] target - chr5:80409594-80409595 G>A BTCA-JP ICGC
chrX:139866284:139866319:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC