Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866190:139866232:[+] chr5:180002245:180002290:[+] nonBSJ supported 3UTR

circRNA 5':AGCUUC-CA-----AAAAA-UC-CGGGUCUUCCAGGAAAUCCGUGUCUUCC 3'


            ||||| || ||||| :| |:| || ||::| |::| |||


target  3':ACGAAGUGUUACCCUUUUUCGGUGUCGAGUAUGUUUU-----CGUAAAAGU 5'

 -16.70 1 RIC-seq
chrX:139866190:139866258:[+] chr5:180002251:180002290:[+] nonBSJ supported 3UTR

circRNA 5':AGCUUC-CAAAAAAUCCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCUUCCAAC-AAAGC 3'


            ||||| ||| ||||| ||| ||||: ||: || |||||


target  3':ACGAAGUGUUAC---------------CCUUU---------------UUC-GGUGUCGAGUA-UGUUUUCGU 5'

 -20.50 1 RIC-seq
chrX:139865832:139865884:[+] chr5:179977054:179977115:[+] nonBSJ supported CDS

circRNA 5': AGUCAGUCAGUGUCUUCC-AGAAAAAU-------CUACGUCUUCCACCAAAUC-CAGGUCUU 3'


            ||| | | :||| |||| || ||||| ||||||:


target  3':CUCACUAUGGUACA-AAGGCUCAAGACGCCCAUUCGAUGCUUAAAAUAAUCUACUGUCCAGGU 5'

 -18.90 1 RIC-seq
chrX:139865832:139865889:[+] chr5:179977043:179977115:[+] nonBSJ supported CDS

circRNA 5': AGUCAGUCAGUGUCUUCC-AGAAAAAU-------CUACGUCUUCCACCAAAUC-CAGGUCUU------CCAGU 3'


            ||| | | :||| |||| || ||||| ||||||: ||||


target  3':CUCACUAUGGUACA-AAGGCUCAAGACGCCCAUUCGAUGCUUAAAAUAAUCUACUGUCCAGGUUUAUGUGGUCU 5'

 -21.10 1 RIC-seq