Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866629:139866690:[+]	chr5:179440197:179440257:[-]	nonBSJ supported	CDS	circRNA 5':AGCAUCUCCAGGGCUUCCAGCAUCUGCUC--GUCUUCCA-ACAUCUCCACG--UCUUCCAGCAU-CUC 3' \|\|\|\| \|\| \|:\| \|\|\|\|\|:\|\| \|\|\| \|\|\| \|\|\| \|\| \|\|\|\|\| \|\|\| target 3':CCGUA-AG--CUC-AAGGUUGU---CGAUAACAGUAAACAUGUCUCUACAAAAAG-AGGUCUAUUGAGU 5'	-28.60	14	RIC-seq
chrX:139866632:139866645:[+]	chr5:179440242:179440257:[-]	nonBSJ supported	CDS	circRNA 5':AUCUCCAGG--GCUUC 3' \|\|\|\|\|\|\|: :\|\|: target 3':AAGAGGUCUAUUGAGU 5'	-14.20	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr5:179440197:179440257:[-]	target	-	chr5:179440204-179440205	G>A	LINC-JP	ICGC