Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865784:139865846:[+] chr5:44815114:44815147:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCA-GUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAGUCAGUGUCU 3'


            ||| :||| |||| ||||||||:|


target  3':CCCAAUAAAACUAGUCGAACACA------------------------------UCAGUCACGGU 5'

 -20.30 4 RIC-seq
chrX:139865801:139865846:[+] chr5:44815114:44815174:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCA--------------GAAAGAAAUCCAGGUCUUCCAGUC-AGUCAGUGUCU 3'


            |||| ::||| || |:|| | || ||||||||:|


target  3':ACACAUGGGGUUGUAUAUAAAAAUGCUCCCAAUAAAACUAGUCGAACACAUCAGUCACGGU 5'

 -24.80 9 RIC-seq
chrX:139865823:139865846:[+] chr5:44815114:44815138:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUC-AGUCAGUGUCU 3'


            |:|| | || ||||||||:|


target  3':ACUAGUCGAACACAUCAGUCACGGU 5'

 -20.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:44815114:44815138:[+] target - chr5:44815132-44815133 C>T LICA-CN ICGC
chr5:44815114:44815147:[+] target - chr5:44815132-44815133 C>T LICA-CN ICGC
chr5:44815114:44815174:[+] target - chr5:44815132-44815133 C>T LICA-CN ICGC