Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865987:139866008:[+] chr5:43704355:43704375:[+] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCAGUAACC-UC-CCA 3'


            |: ||||| :|||| || ||


target  3': UGGAGAAG--UAUUGUUAGUGGA 5'

 -11.80 1 RIC-seq
chrX:139866311:139866359:[+] chr5:43675612:43675657:[+] nonBSJ supported CDS

circRNA 5':UCCAUAGCUUCCGAAAAAUC-CAGGUCUUCCAGGAAAUCCGUGUC-UU-CCA 3'


            |||||||:|||:| |||| || ||||| || || || ||


target  3':CGGUAUCGGAGGUUC-UUAGUGUAAUC--GGUCCCUC--GCUAAGUAACGG 5'

 -34.00 29 RIC-seq
chrX:139866312:139866359:[+] chr5:43675612:43675657:[+] nonBSJ supported CDS

circRNA 5': CCAUAGCUUCCGAAAAAUC-CAGGUCUUCCAGGAAAUCCGUGUC-UU-CCA 3'


            |||||||:|||:| |||| || ||||| || || || ||


target  3':CGGUAUCGGAGGUUC-UUAGUGUAAUC--GGUCCCUC--GCUAAGUAACGG 5'

 -33.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:43675612:43675657:[+] target 1705519 chr5:43675612-43675613 G>T Glucocorticoid_deficiency_4 ClinVar
chrX:139866311:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866359:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC