Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866742:139866783:[+]	chr6:1742786:1742822:[-]	nonBSJ supported	CDS	circRNA 5':ACUGGCUCAAUAUCCAUGUCUUCCAACGUCU-CCAGUGUGCUG 3' \|:\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|:\|\| \|\|\| \|\|: target 3':AGGCCGAGUA----GUA-AGAC-GUUGUAGUUGGUGUAUCGGA 5'	-29.00	2	RIC-seq
chrX:139866768:139866826:[+]	chr6:1742759:1742818:[-]	nonBSJ supported	CDS	circRNA 5': CGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUG------UCUGCAAUAU---CCAGGU 3' \| \|\|:\|\|\|\|\|: \|\|\|: \|:\|\| \|:\|\|\|:\|\|\| \|: \|\|\|\|\|\|\|:\|\| \|\|\| :\| target 3':UGGAGGGGUCAU-CGAU------AUUGC---UUCAGGAGGCCGAGUAGUAAGACGUUGUAGUUGGUGUAU 5'	-45.00	3	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr6:1742759:1742818:[-]	target	-	chr6:1742794-1742795	A>G	LAML-KR	ICGC
chr6:1742786:1742822:[-]	target	-	chr6:1742794-1742795	A>G	LAML-KR	ICGC
chrX:139866768:139866826:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC