Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866316:139866362:[+] chr6:170626908:170626955:[+] nonBSJ supported CDS

circRNA 5':AGCUUCC---GAAAAAUCC-AGGUCUUCCAGGAAAUCC-GUGUCUUCC-AGCA 3'


            |||||| :|| ||: | |:|| |||| || :|| ||||||| |||


target  3':ACGAAGGACGUUUCUUGUGUUUCA-AAGGACC---GGGUCACAGAAAUCUCG 5'

 -31.30 11 RIC-seq
chrX:139866344:139866377:[+] chr6:170626927:170626960:[+] nonBSJ supported CDS

circRNA 5':AAAUCCGUGUCUUCCAGCAAAUC-CACGUC--UUCCA 3'


            |||| || ||||| ||||| |||: ||||


target  3':AUUAG--AC-GAAGGACGUUUCUUGUGUUUCAAAGGA 5'

 -20.80 1 RIC-seq
chrX:139866344:139866391:[+] chr6:170626916:170626960:[+] nonBSJ supported CDS

circRNA 5':AAAUCCGUGUCUUCCAGCAAAUC-CACGUC--UUCCAACAAAGCCA-UGUCU 3'


            |||| || ||||| ||||| |||: |||| ||| ||||


target  3':AUUAG--AC-GAAGGACGUUUCUUGUGUUUCAAAGGACCG---GGUCACAG 5'

 -26.50 1 RIC-seq
chrX:139866344:139866392:[+] chr6:170626915:170626960:[+] nonBSJ supported CDS

circRNA 5':AAAUCCGUGUCUUCCAGCAAAUC-CACGUC--UUCCAACAAAGCCA-UGUCUU 3'


            |||| || ||||| ||||| |||: |||| ||| |||||


target  3':AUUAG--AC-GAAGGACGUUUCUUGUGUUUCAAAGGACCG---GGUCACAGA 5'

 -27.00 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:170626908:170626955:[+] target - chr6:170626943-170626944 T>C LAML-KR ICGC
chr6:170626915:170626960:[+] target - chr6:170626943-170626944 T>C LAML-KR ICGC
chr6:170626916:170626960:[+] target - chr6:170626943-170626944 T>C LAML-KR ICGC
chr6:170626927:170626960:[+] target - chr6:170626943-170626944 T>C LAML-KR ICGC
chrX:139866316:139866362:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC