Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866171:139866194:[+] chr6:138661251:138661267:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCCUUAAAUCUAUAGCUU 3'


            | |||||| |||||


target  3':UC-GAAGGGCUC------AUCGAC 5'

 -11.30 1 RIC-seq
chrX:139866171:139866197:[+] chr6:138661231:138661267:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCCUUAAAUCUA----------UAGCUUCCA 3'


            | |||||| :|||| |||


target  3':UC-GAAGGGCUCAUCGACCCUAAUGUCCGUCGACGGUG 5'

 -13.90 13 RIC-seq
chrX:139866171:139866198:[+] chr6:138661231:138661267:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCCUUAAAUCUA----------UAGCUUCCAA 3'


            | |||||| :|||| |||


target  3':UC-GAAGGGCUCAUCGACCCUAAUGUCCGUCGACGGUG 5'

 -14.50 11 RIC-seq
chrX:139866174:139866198:[+] chr6:138661231:138661264:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCCUUAAAUCUA----------UAGCUUCCAA 3'


            ||||| :|||| |||


target  3': AAGGGCUCAUCGACCCUAAUGUCCGUCGACGGUG 5'

 -11.20 1 RIC-seq