Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866690:139866706:[+] chr6:71571656:71571676:[+] nonBSJ supported 3UTR

circRNA 5': CUGU--GUCUUCCAG-CAUC 3'


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target  3':CGACAUUCAGAAGUUCAGUAA 5'

 -13.30 1 RIC-seq
chrX:139866690:139866719:[+] chr6:71571645:71571676:[+] nonBSJ supported 3UTR

circRNA 5': CUGU--GUCUUCCAG-CAUCUUCAUGUCU--UCCA 3'


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target  3':CGACAUUCAGAAGUUCAGUAAA---ACAGGUUAGG 5'

 -20.20 3 RIC-seq
chrX:139866690:139866721:[+] chr6:71571642:71571676:[+] nonBSJ supported 3UTR

circRNA 5': CUGU--GUCUUCCAG-CAUCUUCAUGUCU--UCCAAC 3'


            |||| |||||| || ||| ||||: |||||


target  3':CGACAUUCAGAAGUUCAGUAAA---ACAGGUUAGGUUU 5'

 -21.70 34 RIC-seq
chrX:139866704:139866746:[+] chr6:71571637:71571669:[+] nonBSJ supported 3UTR

circRNA 5':AUCUUCAUGUCUUCCAACAACUACCCAGUCU--UCCAUCAACUGG 3'


            |||||| ||| |||: |||| |||


target  3':CAGAAGUUCAGUAAAA-----------CAGGUUAGGUUUUCGAC 5'

 -17.80 1 RIC-seq
chrX:139866706:139866712:[+] chr6:71571685:71571691:[+] nonBSJ supported 3UTR

circRNA 5':CUUCAUG 3'


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target  3':AAAGUGU 5'

 -3.50 1 RIC-seq
chrX:139866733:139866749:[+] chr6:71571673:71571691:[+] nonBSJ supported 3UTR

circRNA 5':CUUC-CAUCAACUG-GCUC 3'


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target  3':AAAGUGUUUCCUAAACGAC 5'

 -4.10 2 RIC-seq