Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865334:139865398:[+] chr6:64288874:64288932:[+] nonBSJ supported CDS

circRNA 5':GUCCAGGGUUUCCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGG-UCUUCCAGCGACUUC 3'


            ||||:||::| |:|: ||| :|| :|: | |||||| ||:|| ||||| | :||||


target  3':AGGGUUCCGGACGUUG-CGU---UACUUG-UCGUUAUGUUGUU--GGUCCAAGAAGUGCUUUGAAU 5'

 -43.50 17 RIC-seq
chrX:139865335:139865398:[+] chr6:64288874:64288930:[+] nonBSJ supported CDS

circRNA 5':UCCAGGGUUUCCGAUGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGG-UCUUCCAGCGACUUC 3'


            |||:||::| |:|: ||| :|| :|: | |||||| ||:|| ||||| | :||||


target  3': GGUUCCGGACGUUG-CGU---UACUUG-UCGUUAUGUUGUU--GGUCCAAGAAGUGCUUUGAAU 5'

 -41.80 1 RIC-seq
chrX:139865341:139865398:[+] chr6:64288874:64288934:[+] nonBSJ supported CDS

circRNA 5':GUUUCCGAUGGCACCUGUGU--CAAGGUCUUCCA--ACAACU-CCGGG-UCUUCCAGCGACUUC 3'


            ||:||:| ||| |||:: ||| || ||||| ||:|| ||||| | :||||


target  3':GGAGGGUU-CCG--GACGUUGCGUUACUUGUCGUUAUGUUGUUGGUCCAAGAAGUGCUUUGAAU 5'

 -36.60 1 RIC-seq
chrX:139865345:139865398:[+] chr6:64288874:64288931:[+] nonBSJ supported CDS

circRNA 5': CCGAUGGCACCUGUGU--CAAGGUCUUCCA--ACAACU-CCGGG-UCUUCCAGCGACUUC 3'


            ||:| ||| |||:: ||| || ||||| ||:|| ||||| | :||||


target  3':GGGUU-CCG--GACGUUGCGUUACUUGUCGUUAUGUUGUUGGUCCAAGAAGUGCUUUGAAU 5'

 -34.20 20 RIC-seq