Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865712:139865738:[+] chr6:17514120:17514153:[+] nonBSJ supported CDS

circRNA 5':CUUCCA----GUAAAUCU--AGUUC-UUCCAGAA 3'


            |||| ||| ||||| :||||:|


target  3':CAAGGAACUACAUACGAACUUCAAGUGAGGUUUA 5'

 -13.60 6 RIC-seq
chrX:139865725:139865738:[+] chr6:17514120:17514134:[+] nonBSJ supported CDS

circRNA 5':UAGUUC-UUCCAGAA 3'


            ||||| :||||:|


target  3':UUCAAGUGAGGUUUA 5'

 -12.40 1 RIC-seq
chrX:139865762:139865803:[+] chr6:17514113:17514156:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCCA-GAAAGAAAUCC-AGG-UC-UUCCAGUCAAUCAGU 3'


            |||| ||| || |:| || :||||: |||:


target  3':CCACA--AGGAACUACAUACGAACUUCAAGUGAGGUUUACAAGUUU 5'

 -13.10 8 RIC-seq
chrX:139865784:139865814:[+] chr6:17514120:17514157:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAAUC-------AGUGUC-UUCCAGAA 3'


            ||| |||| ||| || :||||:|


target  3':ACCACAAGGAACUACAUACGAACUUCA-AGUGAGGUUUA 5'

 -13.20 1 RIC-seq