Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865488:139865551:[+] chr6:90461214:90461263:[-] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAAGAAGCUCCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAAUCCAGU---CUUCC 3'


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target  3':AGAGUAGAUAACAUC-CGAGGAACAGAGGGU--------------GG-CG-UUAGGUCAUCGGAAGU 5'

 -38.10 9 RIC-seq
chrX:139866682:139866715:[+] chr6:90383897:90383932:[-] nonBSJ supported CDS

circRNA 5':CAGCAUCUCUGU--GUCUUCCAGCAUCUUCAUGUCU 3'


            ||||||||||| :|||: || ||:|


target  3':AUCGUAGAGACAAUUAGAGCAUCAACUGACAACGGU 5'

 -24.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:90383897:90383932:[-] target - chr6:90383929-90383930 G>T LICA-CN ICGC