Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866639:139866685:[+] chr6:126210320:126210369:[+] nonBSJ supported CDS

circRNA 5':GGGCUUCCAG-CAUCUGCUCGUCUUCCAACA----UCUCCACGUCU---UCCAGC 3'


            ||||| || || ||| ||| ||||| |||||


target  3': UCGAA--UCAGU-GACACCCUCUUGGUACCCUACAGAGGGAUCUCCUCAGGUC 5'

 -19.50 2 RIC-seq
chrX:139866639:139866698:[+] chr6:126210321:126210369:[+] nonBSJ supported CDS

circRNA 5':GGGCUUCCAG-CAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCC-AGCAUCUCUGUGUCUU 3'


            ||||| || || ||| ||| ||||:|| || |||:


target  3': UCGAA--UCAGU-GACACCCUCUUGGUACCCUA----CAGAGGGAUCUCCU-----CAGGU 5'

 -18.50 26 RIC-seq