Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865500:139865520:[+] chr6:125598262:125598284:[-] nonBSJ supported CDS

circRNA 5': AGAAG-CUCCAAGUCUUCCAGU 3'


            ||||| || |||||:||||


target  3':AUCUUCAGAACGUCAGAGGGUCC 5'

 -23.00 1 RIC-seq
chrX:139866627:139866664:[+] chr6:125597318:125597352:[-] nonBSJ supported CDS

circRNA 5':CCAGCAUCUCCAGGGCUUCCAGCAUCUG-CUCGUCUUCC 3'


            |||| || ||||| |||| |||: |||


target  3': GUCGAUACAAUCACGAAGAA---AGACGGAGUUCAAGU 5'

 -19.50 10 RIC-seq
chrX:139866628:139866664:[+] chr6:125597319:125597352:[-] nonBSJ supported CDS

circRNA 5':CAGCAUCUCCAGGGCUUCCAGCAUCUG-CUCGUCUUCC 3'


            ||| || ||||| |||| |||: |||


target  3': UCGAUACAAUCACGAAGAA---AGACGGAGUUCAAGU 5'

 -16.90 1 RIC-seq
chrX:139866653:139866717:[+] chr6:125597302:125597346:[-] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCU-CUGUGUCUUCCAGCAUCUUCAUGUCUUC 3'


            ||||: || |||| | ||:||| || |||| ||:||:


target  3':CCGAGU-------------------GACCGUCGACGUCGAUACAAUCA--CGAAGAAAGACGGAGU 5'

 -25.50 13 RIC-seq
chrX:139866689:139866717:[+] chr6:125597320:125597346:[-] nonBSJ supported CDS

circRNA 5':UCUGUGUCUUCCAGCAUCUUCAUGUCUUC 3'


            ||:||| || |||| ||:||:


target  3':CGAUACAAUCA--CGAAGAAAGACGGAGU 5'

 -16.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:125597302:125597346:[-] target - chr6:125597338-125597339 T>G LINC-JP ICGC
chr6:125597302:125597346:[-] target - chr6:125597344-125597345 T>C LINC-JP ICGC
chr6:125597318:125597352:[-] target - chr6:125597338-125597339 T>G LINC-JP ICGC
chr6:125597318:125597352:[-] target - chr6:125597344-125597345 T>C LINC-JP ICGC
chr6:125597319:125597352:[-] target - chr6:125597338-125597339 T>G LINC-JP ICGC
chr6:125597319:125597352:[-] target - chr6:125597344-125597345 T>C LINC-JP ICGC
chr6:125597320:125597346:[-] target - chr6:125597338-125597339 T>G LINC-JP ICGC
chr6:125597320:125597346:[-] target - chr6:125597344-125597345 T>C LINC-JP ICGC