Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865895:139865908:[+] chr6:122765916:122765929:[-] nonBSJ supported 3UTR

circRNA 5': CACAUCUUCCGGAA 3'


            |||| || :||


target  3':AGUGUUGAUA-UCUC 5'

 -6.00 12 RIC-seq
chrX:139865895:139865929:[+] chr6:122765916:122765942:[-] nonBSJ supported 3UTR

circRNA 5': CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            |||| || :|| |||: ||||


target  3':AGUGUUGAUA-UCUC------GUCUCUUAU-UCGG 5'

 -11.10 1 RIC-seq
chrX:139865895:139865929:[+] chr6:122765916:122765943:[-] nonBSJ supported 3UTR

circRNA 5': CACAUCUUCCGGAAAAAAUCCAGGUCUUCCAGCCA 3'


            |||| || :|| |||: ||||


target  3':AGUGUUGAUA-UCUC------GUCUCUUAU-UCGGG 5'

 -10.80 12 RIC-seq
chrX:139866347:139866402:[+] chr6:122765773:122765814:[-] nonBSJ supported 3UTR

circRNA 5':UCCGUG-UCUUCCAGCAA-AUCCACGUCUUCCAACAAAGCCAUGUCUUCCAUCAAAUU 3'


            ||:|| |||| ||| |||| |:| ||||| ||||||||


target  3':UGGUACAAGAAA--CGUCAUAGGA-CGGUCCGUUGU-------------GUAGUUUAU 5'

 -26.70 17 RIC-seq
chrX:139866349:139866373:[+] chr6:122765787:122765810:[-] nonBSJ supported 3UTR

circRNA 5':CGUGUCUU-CCA-GCAAAUCCACGUCU 3'


            ||:||:| ||| |||| |||:||


target  3':UCAUAGGACGGUCCGUU---GUGUAGU 5'

 -22.70 2 RIC-seq
chrX:139865876:139865909:[+] chr6:122774937:122774977:[-] nonBSJ supported CDS

circRNA 5': CCAGGUCUUCCAG----UCAAUCCACA--UC-UUCCG-GAAA 3'


            || ||||||| ||||:|||| || ||||: |||


target  3':GGGA--AGAAGGUAAAAAAGUUGGGUGCUAAGUAAGGUACUUA 5'

 -28.40 3 RIC-seq
chrX:139866021:139866051:[+] chr6:122774935:122774972:[-] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCCAA----CAAUCCAAG--UC-UUCC 3'


            ||| | |||||| |||:||| || ||||


target  3':AAGG-GAAGAAGGUAAAAAAGUUGGGUGCUAAGUAAGGU 5'

 -22.00 18 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865895:139865908:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865895:139865929:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139865876:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC