Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866693:139866752:[+] chr6:116917610:116917670:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGCAUCUUCAUGUCU---UCCAACAACU------ACCCAGUCUUCCAUCAACUGGCUCAAU 3'


            |||:| |||||| || |||||||| |||| :|| |||||| |||:| |||


target  3':UCAGGA--------AAGUACCGAAACAGGUUGUUAAAUUUACUGGGGUAGUAGGUAGGAGACUGUGUUC 5'

 -45.20 11 RIC-seq
chrX:139866709:139866752:[+] chr6:116917610:116917661:[+] nonBSJ supported 3UTR

circRNA 5':CAUGUCU---UCCAACAACU------ACCCAGUCUUCCAUCAACUGGCUCAAU 3'


            ||| || |||||||| |||| :|| |||||| |||:| |||


target  3': UACCGAAACAGGUUGUUAAAUUUACUGGGGUAGUAGGUAGGAGACUGUGUUC 5'

 -36.80 1 RIC-seq
chrX:139866709:139866752:[+] chr6:116917610:116917663:[+] nonBSJ supported 3UTR

circRNA 5': CAUGUCU---UCCAACAACU------ACCCAGUCUUCCAUCAACUGGCUCAAU 3'


            |||| || |||||||| |||| :|| |||||| |||:| |||


target  3':AGUACCGAAACAGGUUGUUAAAUUUACUGGGGUAGUAGGUAGGAGACUGUGUUC 5'

 -40.20 14 RIC-seq
chrX:139866730:139866752:[+] chr6:116917610:116917631:[+] nonBSJ supported 3UTR

circRNA 5':AGUCUUCCAUCAACUGGCUCAAU 3'


            ||| |||||| |||:| |||


target  3': UAGUAGGUAGGAGACUGUGUUC 5'

 -21.60 1 RIC-seq
chrX:139866730:139866752:[+] chr6:116917610:116917632:[+] nonBSJ supported 3UTR

circRNA 5':AGUCUUCCAUCAACUGGCUCAAU 3'


            ||| |||||| |||:| |||


target  3':GUAGUAGGUAGGAGACUGUGUUC 5'

 -21.80 1 RIC-seq
chrX:139865491:139865519:[+] chr6:116914184:116914208:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAAGAAGCUCCAAGUCUUCCAG 3'


            |||:||| ||||||||||| ||||


target  3':GUAGGAGG----UCGAGGUUCAGUAGGUA 5'

 -34.60 10 RIC-seq
chrX:139866650:139866686:[+] chr6:116914142:116914203:[+] nonBSJ supported CDS

circRNA 5':AUCU-GCUC---GUCUUCCAAC---------------------AUCUCCACGUC--UUCCAGCA 3'


            ||: |||| ||| |||| |:|||||||| |||||||


target  3': AGGUCGAGGUUCAGUAGGUAAAGAACCUUGUUUCUGAGUAGAUGGAGGUGCAACAAAGGUCG 5'

 -38.00 13 RIC-seq