Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866489:139866530:[+] chr12:120878362:120878399:[+] nonBSJ supported 3UTR

circRNA 5':AAGGUACGUCUUCCAGAAAAUCCACGU-CU----UCCAACCAAGCCA 3'


            || ||| ||||:| ||| || || ||| |||


target  3': UCAUUGCC--AGGUUU----GGU-CACGACACCAGGGACCA-CGGG 5'

 -19.10 30 RIC-seq
chrX:139866493:139866530:[+] chr12:120878362:120878395:[+] nonBSJ supported 3UTR

circRNA 5':UACGUCUUCCAGAAAAUCCACGU-CU----UCCAACCAAGCCA 3'


            ||| ||||:| ||| || || ||| |||


target  3': UGCC--AGGUUU----GGU-CACGACACCAGGGACCA-CGGG 5'

 -16.20 1 RIC-seq
chrX:139866522:139866539:[+] chr12:120878370:120878391:[+] nonBSJ supported 3UTR

circRNA 5':ACCAAGCCA----UGUCUUCCA 3'


            ||||:||| ||| |||


target  3':AGGUUUGGUCACGACACCAGGG 5'

 -16.00 33 RIC-seq
chrX:139866522:139866547:[+] chr12:120878361:120878391:[+] nonBSJ supported 3UTR

circRNA 5':ACCAAGCCA----UGUCUUCCAGAAAAUCC 3'


            ||||:||| ||| ||| :||


target  3':AGGUUUGGUCACGACACCAGGGACCACGGGC 5'

 -17.10 1 RIC-seq