Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866274:139866287:[+] chr12:112220961:112220973:[+] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUCCA 3'


            ||||::||||||


target  3':CAGGUGUAGAAGG 5'

 -19.10 1 RIC-seq
chrX:139866316:139866341:[+] chr12:112220961:112220979:[+] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAUCCAGGUCUUCCA 3'


            ||:| |||| :||||||


target  3':ACGGAAC------AGGUGUAGAAGG 5'

 -19.30 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866341:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC