Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865534:139865570:[+]	chr12:111779748:111779798:[+]	nonBSJ supported	CDS	circRNA 5':CAGCAAAUCCAGUCU-----------------UCCAGCAAUUACUGGUCUUCCA 3' \|\|\| \|\|\|\| \|\|\|\|\|\| \|\|:\|\|\|\|\| target 3':CUCGAGCUAC-CAGACGACGCUCCCCAUCCCAAGGUCGACUAU--CCGGAAGGC 5'	-25.80	16	RIC-seq
chrX:139866127:139866139:[+]	chr12:111785668:111785680:[+]	nonBSJ supported	CDS	circRNA 5':GGCCUCCA-GGUCU 3' \|\|\|: \|\|\|\| target 3':AUGGGCCUCCCAG 5'	-10.10	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr12:111779748:111779798:[+]	target	-	chr12:111779779-111779780	C>T	PACA-CA	ICGC
chr12:111779748:111779798:[+]	target	-	chr12:111779792-111779793	C>T	LAML-KR	ICGC