Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865966:139865997:[+] chr12:57033003:57033036:[-] nonBSJ supported CDS

circRNA 5':AUCCAUGUCUUC--CAGAAAAUCCAUGUCUUCCA 3'


            ||| ||: || ||||||||


target  3':AAGGCACGUGCCCUGUGCCAGUUGAACAGAAGGA 5'

 -16.40 33 RIC-seq
chrX:139865968:139865997:[+] chr12:57033009:57033036:[-] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGAAAAUCCAUGUCUUCCA 3'


            ||:| ||: ||||||||


target  3':CGUGCCCUGUGCCAGUUGA--ACAGAAGGA 5'

 -14.00 1 RIC-seq
chrX:139865970:139865979:[+] chr12:57033027:57033036:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCA 3'


            ||||||||


target  3':AACAGAAGGA 5'

 -13.10 1 RIC-seq
chrX:139865971:139865983:[+] chr12:57033027:57033041:[-] nonBSJ supported CDS

circRNA 5': UGUCUUCC--AGAAA 3'


            |||||||| ||||


target  3':AACAGAAGGAGUCUU 5'

 -14.00 1 RIC-seq
chrX:139865988:139865997:[+] chr12:57033027:57033036:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCA 3'


            ||||||||


target  3':AACAGAAGGA 5'

 -13.10 1 RIC-seq