Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865646:139865701:[+]	chr12:51455031:51455092:[-]	nonBSJ supported	3UTR	circRNA 5':CAAAUACAG-AUCUUC-CAGC-UAAUCCAUGUCUUCCAGAAAAAUCUGUG-UCUUCC-ACC 3' \|\|\|\|\|\|\|\| \|\| \|\| \|\|: \|\|\| \|\|\|\|\|\| \|:\| \|\| \|\|\| target 3':AUUUAUGUCGUAAUAGUGUUACAUUUCUUGGAUUUCCCCUUUUUUAAUAAAAGUCUCUUGGU 5'	-13.90	1	RIC-seq
chrX:139865646:139865703:[+]	chr12:51455031:51455093:[-]	nonBSJ supported	3UTR	circRNA 5':CAAAUACAG-AUCUUC-CAGC-UAAUCCAUGUCUUCCAGAAAAAUCUGUG-UCUUCC-ACCAA 3' \|\|\|\|\|\|\|\| \|\| \|\| \|\|: \|\|\| \|\|\|\|\|\| \|:\| \|\| \|\|\|\| target 3':AUUUAUGUCGUAAUAGUGUUACAUUUCUUGGAUUUCCCCUUUUUUAAUAAAAGUCUCUUGGUC 5'	-16.50	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr12:51455031:51455092:[-]	target	-	chr12:51455063-51455064	A>G	PRAD-CA	ICGC
chr12:51455031:51455093:[-]	target	-	chr12:51455063-51455064	A>G	PRAD-CA	ICGC