Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865654:139865673:[+] chr12:27825361:27825394:[+] nonBSJ supported CDS

circRNA 5':GAUCUUCCA----GCUAA----------UCCAUG 3'


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target  3':AUAGUUGUCACCGUGGUUCCUAAUACAAAGGUAG 5'

 -6.40 1 RIC-seq
chrX:139866614:139866625:[+] chr12:27820172:27820183:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGGUCU 3'


            |||||||:||


target  3':AAGAGGUCUAGU 5'

 -17.10 2 RIC-seq
chrX:139866614:139866632:[+] chr12:27820165:27820183:[+] nonBSJ supported CDS

circRNA 5':AUCUCCAGGUCUUCC-AGCA 3'


            |||||||:|| |:|


target  3':AAGAGGUCUAGUGACUUUG 5'

 -17.60 50 RIC-seq