Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865534:139865566:[+] chr11:33377930:33377957:[+] nonBSJ supported 3UTR

circRNA 5':CAGCAAAUCCAGUCUUCCAGCAAUUACUGGUCU 3'


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target  3':UUCGUAAUUUU-----GGCUUCUUUUGACCAGU 5'

 -13.20 16 RIC-seq
chrX:139865549:139865566:[+] chr11:33377930:33377947:[+] nonBSJ supported 3UTR

circRNA 5':UCCAGCAAUUACUGGUCU 3'


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target  3':UGGCUUCUUUUGACCAGU 5'

 -12.40 10 RIC-seq
chrX:139865733:139865740:[+] chr11:33308812:33308819:[+] nonBSJ supported CDS

circRNA 5':CCAGAAAA 3'


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target  3':AGUCUUUC 5'

 -6.30 4 RIC-seq
chrX:139866657:139866691:[+] chr11:33308785:33308813:[+] nonBSJ supported CDS

circRNA 5':CGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCU 3'


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target  3':UCAGUA---UGUUCAAAAC---AAGGUCGUAGAGU 5'

 -22.00 25 RIC-seq