Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865900:139865909:[+] chr11:119172170:119172179:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCGGAAA 3'


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target  3':AAAGUCCUUC 5'

 -6.30 1 RIC-seq
chrX:139866132:139866147:[+] chr11:119172167:119172177:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCCAGACU 3'


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target  3':AGUCCU-----UCUGU 5'

 -7.00 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865900:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC