Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865938:139865957:[+] chr11:10827462:10827480:[-] nonBSJ supported CDS

circRNA 5':CUUCCUGAAGAUCCACGUCU 3'


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target  3':AAAGGACUUCUAAC-GUAGU 5'

 -19.20 1 RIC-seq
chrX:139865938:139865978:[+] chr11:10827462:10827489:[-] nonBSJ supported CDS

circRNA 5':CUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUC-UUCC 3'


            ||||||||||| |:|| ||||| |||


target  3':AAAGGACUUCUAAC-GUAG-------------UACAGCAAGA 5'

 -22.70 20 RIC-seq
chrX:139865939:139865978:[+] chr11:10827464:10827489:[-] nonBSJ supported CDS

circRNA 5':UUCCUGAAGAUCCACGUCUUCCAGAAAAUCCAUGUC-UUCC 3'


            |||||||||| |:|| ||||| |||


target  3': AGGACUUCUAAC-GUAG-------------UACAGCAAGA 5'

 -21.00 1 RIC-seq
chrX:139866204:139866241:[+] chr11:10823913:10823954:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAA---UC-CGUGUCUUCCAGCAAGUCC 3'


            ||| |:|||||:|| || | | || ||| ||:|


target  3':UGCCAGGGAGGUCUUUCUUCAGUGAAGAGUAGGGAACUCGGU 5'

 -27.90 1 RIC-seq
chrX:139866204:139866271:[+] chr11:10823913:10823964:[-] nonBSJ supported CDS

circRNA 5':CCGGGUCUUCCAGGAAAUCCGUGUCUUCCAGCAAGUCCACGUCU--UCCAACAAAGCCAUGUCUUCCAGA 3'


            ||| |:|||||:| || |||| ||| ||| ||| ||||||: |||


target  3':UGCCAGGGAGGUCUU--------------UC-UUCA-GUGAAGAGUAGGGAAC-UCGGUAUCCUC-GUCC 5'

 -38.60 26 RIC-seq