Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866023:139866049:[+] chr11:101868417:101868443:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUCUUCCCAACAAUCCAAGUCUU 3'


            |||: ||| ||||:|


target  3':AGUGUUUUGCCAUACGUAGA-UCAGGAU 5'

 -9.50 1 RIC-seq
chrX:139866023:139866049:[+] chr11:101868417:101868468:[+] nonBSJ supported 3UTR

circRNA 5':CCACGUC--UUCCCA------------ACA-----------AUCCAAGUCUU 3'


            |||:| |||| ||| ||| ||||:|


target  3':AGUGUACAAAAGGAUACCGACCAAAAGUGUUUUGCCAUACGUAGA-UCAGGAU 5'

 -9.60 12 RIC-seq
chrX:139866062:139866101:[+] chr11:101868427:101868463:[+] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCUGAAAAUCUACGUCUUC-CAAAAAAGCCAUGUC 3'


            || |||||: || || ||| ||||| |||:


target  3':ACAAAAGGAUACC--GAC-CAAAAGUGUUUUGCCA-UACGU 5'

 -12.20 16 RIC-seq
chrX:139866093:139866106:[+] chr11:101868455:101868471:[+] nonBSJ supported 3UTR

circRNA 5':AGC---CAUGUCUUCCA 3'


            || ||||| ||||


target  3':ACGAGUGUACAAAAGGA 5'

 -11.30 1 RIC-seq
chrX:139865513:139865532:[+] chr11:101818853:101818874:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCAA--GUCUU 3'


           |:|||||| ||||


target  3':GGAGGUCAAAUAACAACCAGAU 5'

 -12.50 15 RIC-seq