Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865945:139865978:[+] chr11:68343436:68343464:[+] nonBSJ supported CDS

circRNA 5':AAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCC 3'


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target  3': UCU---UGCAGAGGGUAGCA-AGGGACUGAAGC 5'

 -25.80 21 RIC-seq
chrX:139865945:139865987:[+] chr11:68343424:68343464:[+] nonBSJ supported CDS

circRNA 5':AAGAUCCACGUCUUCCAGAAAAUCCAUGUCUUCCA---GAAAAUCC 3'


            ||| ||||||:||| ||| || |||| ||| |||


target  3': UCU---UGCAGAGGGUAGCA-AGGGACUGAAGCAGCCCUUCUAGA 5'

 -26.70 19 RIC-seq
chrX:139865987:139866008:[+] chr11:68343443:68343462:[+] nonBSJ supported CDS

circRNA 5':CAUGUCUUCCAGUAACCUCCCA 3'


            |:||||:||| ||||


target  3':UUGCAGAGGGUAGCA--AGGGA 5'

 -20.10 1 RIC-seq