Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865891:139865905:[+] chr4:1944210:1944225:[+] nonBSJ supported 3UTR

circRNA 5':AAUC-CACAUCUUCCG 3'


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target  3':AUAGUGUGUAGAAGGU 5'

 -19.50 2 RIC-seq
chrX:139866034:139866052:[+] chr4:1944210:1944233:[+] nonBSJ supported 3UTR

circRNA 5':CAACA----AUC-CAAGUCUUCCG 3'


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target  3':UUUGUCUAAUAGUGUGUAGAAGGU 5'

 -13.80 2 RIC-seq
chrX:139865947:139865993:[+] chr4:1945740:1945789:[+] nonBSJ supported Intron

circRNA 5':GAUCCACG-UCUUCCAGAAAAUCCAUGUCUUCCAGAAAAU-CC-AUGUCU 3'


            ||||||| ||::||| :|| || | ||| || || |||||


target  3':GUAGGUGCAAGGGGGUACACGGGGACCAAUAAGUCGACUACGGUUACAGU 5'

 -34.40 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:1945740:1945789:[+] target - chr4:1945783-1945784 G>A LAML-KR ICGC
chrX:139865891:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC