Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866216:139866229:[+] chr4:144336827:144336840:[+] nonBSJ supported 5UTR

circRNA 5': GGAAAUCCGUGUCU 3'


            |:||||||| |||


target  3':UCUUUUAGGC-CAGU 5'

 -16.20 9 RIC-seq
chrX:139866342:139866355:[+] chr4:144336827:144336840:[+] nonBSJ supported 5UTR

circRNA 5': GGAAAUCCGUGUCU 3'


            |:||||||| |||


target  3':UCUUUUAGGC-CAGU 5'

 -16.20 6 RIC-seq
chrX:139866348:139866362:[+] chr4:144336855:144336870:[+] nonBSJ supported 5UTR

circRNA 5':CCGUGUCUUCCA-GCA 3'


            |:| ||:||| ||


target  3':AGUAGAGGAGGAGCGA 5'

 -15.50 2 RIC-seq
chrX:139866638:139866671:[+] chr4:144336684:144336726:[+] nonBSJ supported 5UTR

circRNA 5':AGGGCUUCCA-GCAUCUGCUCGUC---------UUCCA--ACAUCU 3'


            ||||||| ||| || ||:| ||||| |||||


target  3':AUCCGAAGAACCGU--ACUAGUAAAAACAUUAUAAGGUUUUGUAG 5'

 -22.70 11 RIC-seq
chrX:139866643:139866660:[+] chr4:144336754:144336771:[+] nonBSJ supported 5UTR

circRNA 5':UUCCAGCAUCUGCUCGUC 3'


            ||||||||||:|| ||


target  3':UAGGUCGUAGAUGAACAA 5'

 -24.00 5 RIC-seq
chrX:139866643:139866700:[+] chr4:144336707:144336771:[+] nonBSJ supported 5UTR

circRNA 5':UUCCAGCAUCUGCU------CGUCUUCCAACAUCUCC---ACGUCUUCCAGCAUCUCUGUGUCUUCC 3'


            ||||||||||:|| |:| ||| ||| || ||| |::| ||


target  3':UAGGUCGUAGAUGAACAACUGUAUUUAAAUUUAGUUAUUAUGCUUAUC--CGAAGAACCGUACUAGU 5'

 -27.00 14 RIC-seq
chrX:139865539:139865552:[+] chr4:144361268:144361283:[+] nonBSJ supported CDS

circRNA 5':AAUCCAG-UCUUC-CA 3'


            |||||| ||||| |


target  3':GUAGGUCAAGAAGUGA 5'

 -14.70 14 RIC-seq
chrX:139865857:139865890:[+] chr4:144359675:144359713:[+] nonBSJ supported CDS

circRNA 5':UCUACGUCUUCCACCAAAUCC-------AGGUCUUCCAGUC 3'


            |||||| |||| ||| ||||


target  3':UGAUGCACUUCCGCUG-UAGGGACGACAUCCCUAU-GUCAU 5'

 -13.10 5 RIC-seq
chrX:139866024:139866107:[+] chr4:144359247:144359304:[+] nonBSJ supported CDS

circRNA 5': CACGUCUUCCCAACAAUCCAAGUCUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUC-UUCCAG 3'


            ||||| |:| |:||| | || ||||||||||| || |||||


target  3':CGUGCA-----------------------CUUCCACCUCUCAGCAUAUAGUAAACGA-C-GAC--UUUUUUCGGUA-AGUAAGGUA 5'

 -24.10 1 RIC-seq
chrX:139866050:139866107:[+] chr4:144359247:144359302:[+] nonBSJ supported CDS

circRNA 5':CCG-GAUAAUUU-GGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUC-UUCCAG 3'


            || || |:||| | || ||||||||||| || |||||


target  3':UGCACUUCCACCUCUCAGCAUAUAGUAAACGA-C-GAC--UUUUUUCGGUA-AGUAAGGUA 5'

 -23.50 17 RIC-seq
chrX:139866051:139866107:[+] chr4:144359247:144359293:[+] nonBSJ supported CDS

circRNA 5':CGGAUAAUUUGGGUCUUCCUGAAAAUCUACGUCUUCCAAAAAAGCCAUGUC-UUCCAG 3'


            ||| |:||| | || ||||||||||| || |||||


target  3':ACCU------CUCAGCAUAUAGUAAACGA-C-GAC--UUUUUUCGGUA-AGUAAGGUA 5'

 -23.40 1 RIC-seq
chrX:139866058:139866107:[+] chr4:144359247:144359329:[+] nonBSJ supported CDS

circRNA 5':UUUGG-GUCUUCCUGAAAAUC------UACGU-----------------------------CUUCCAAAAAAGCCAUGUC-UUCCAG 3'


            |||| ||| ||||| :|||| || ||||||||||| || |||||


target  3':CGACCUCAGUU-GACUUCGUCUACCCCGUGCACUUCCACCUCUCAGCAUAUAGUAAACGACGAC--UUUUUUCGGUA-AGUAAGGUA 5'

 -27.10 16 RIC-seq
chrX:139866059:139866107:[+] chr4:144359247:144359328:[+] nonBSJ supported CDS

circRNA 5':UUGG-GUCUUCCUGAAAAUC------UACGU-----------------------------CUUCCAAAAAAGCCAUGUC-UUCCAG 3'


            ||| ||| ||||| :|||| || ||||||||||| || |||||


target  3':GACCUCAGUU-GACUUCGUCUACCCCGUGCACUUCCACCUCUCAGCAUAUAGUAAACGACGAC--UUUUUUCGGUA-AGUAAGGUA 5'

 -26.80 1 RIC-seq
chrX:139866276:139866301:[+] chr4:144359614:144359638:[+] nonBSJ supported CDS

circRNA 5':CCAUGUCUUCCAGAAA--AUCCUUGUCU 3'


            ||:|| ||||| | ||| |||


target  3':UGUGCA-AAGGUGUCCUCUAGC--CAGU 5'

 -12.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:144359247:144359293:[+] target - chr4:144359261-144359262 T>- PACA-CA ICGC
chr4:144359247:144359302:[+] target - chr4:144359261-144359262 T>- PACA-CA ICGC
chr4:144359247:144359304:[+] target - chr4:144359261-144359262 T>- PACA-CA ICGC
chr4:144359247:144359328:[+] target - chr4:144359261-144359262 T>- PACA-CA ICGC
chr4:144359247:144359328:[+] target - chr4:144359319-144359320 T>G LINC-JP ICGC
chr4:144359247:144359329:[+] target - chr4:144359261-144359262 T>- PACA-CA ICGC
chr4:144359247:144359329:[+] target - chr4:144359319-144359320 T>G LINC-JP ICGC