Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865697:139865767:[+] chr4:52781190:52781253:[+] nonBSJ supported 3UTR

circRNA 5':CCACCAAAUCCAAGUCUU--CCAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCU---UCCAGUCAAUCA-GUGUC 3'


            |||| |||| |||| ||| ||||:| ||:|:|:|:|| ||||||| |||| :|||


target  3': GUGGGCUUUCUUCAAAAUCGGUC-------UCA---AGGUUUA-UUGGGUUUGGAAAAAGGUCAG-UAGUGUACAA 5'

 -41.40 1 RIC-seq
chrX:139865697:139865767:[+] chr4:52781190:52781254:[+] nonBSJ supported 3UTR

circRNA 5':CCACCAAAUCCAAGUCUU--CCAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGAUCU---UCCAGUCAAUCA-GUGUC 3'


            |||| |||| |||| ||| ||||:| ||:|:|:|:|| ||||||| |||| :|||


target  3':AGUGGGCUUUCUUCAAAAUCGGUC-------UCA---AGGUUUA-UUGGGUUUGGAAAAAGGUCAG-UAGUGUACAA 5'

 -42.60 1 RIC-seq
chrX:139866484:139866503:[+] chr4:52740435:52740457:[+] nonBSJ supported 5UTR

circRNA 5':CAACAA-AGGUACGU---CUUCCA 3'


            ||| |:| ||: |||||


target  3': UUGACGUUCUGGCGUCUGAAGGA 5'

 -12.20 2 RIC-seq