Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866094:139866120:[+] chr17:25639814:25639833:[+] nonBSJ supported 3UTR

circRNA 5': GCCAUGUCUUCCAGAAAAUCCACAUCU 3'


            ||| :|:||: |:||| ||


target  3':ACGG-GCGGAG-------UGGGUUAAGU 5'

 -15.10 2 RIC-seq
chrX:139866361:139866399:[+] chr17:25640131:25640176:[+] nonBSJ supported 3UTR

circRNA 5':CAAAUCCACGUCUUCCAACA-AAGCCAUGU----CUUCCA--UCAA 3'


            |||||| ||:: ||| ||:| ||| |||||| |||


target  3':UUUUAGGAAAAGGGACAUGUAUUUGACACAAAGUGAAGGUCUAGUC 5'

 -20.20 1 RIC-seq
chrX:139866036:139866067:[+] chr17:25630494:25630530:[+] nonBSJ supported CDS

circRNA 5':ACAAUC-CAAGUCUUCCGGAUA--AUUUG---GGUCUU 3'


            ||| |||| | |||:||: ||: :||||


target  3':GGUUUUCGUUCUG-AGGUCUGAUAUAGAGGUGUCAGAU 5'

 -17.70 1 RIC-seq
chrX:139866763:139866815:[+] chr17:25631911:25631939:[+] nonBSJ supported CDS

circRNA 5':UCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGC 3'


            ||| |:||| |||||||| ||| ||||


target  3':UGGUAGUAGA----------------------AAGUCCAG--GGUAUGAGACU 5'

 -25.00 2 RIC-seq
chrX:139865773:139865807:[+] chr17:25635982:25636002:[+] nonBSJ supported Intron

circRNA 5':GAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCU 3'


            |||||| ||||||||


target  3':AUUUCUUAUACG--------------AGUCACAGU 5'

 -13.50 1 RIC-seq
chrX:139865855:139865870:[+] chr17:25635136:25635154:[+] nonBSJ supported Intron

circRNA 5': AAUCUAC--GUCUUCCAC 3'


            ||||| | |||||


target  3':CUUAGACUUUCUUAAGGUU 5'

 -6.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866763:139866815:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC