Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865890:139865909:[+] chr17:66527520:66527538:[+] nonBSJ supported 3UTR

circRNA 5':CAAUCCACAUCUUCCGGAAA 3'


            |||||| ||||:| ||||


target  3':UUUAGGU-UAGAGGACCUUA 5'

 -17.70 50 RIC-seq
chrX:139865725:139865773:[+] chr17:66521912:66521944:[+] nonBSJ supported CDS

circRNA 5':UAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCU-UCCAG 3'


            ||:||:: :||||| :||| || || :|||


target  3':UUCGAGGGA--------------GGAAGG--GGUU-GUGACCAACGGGUA 5'

 -17.20 1 RIC-seq
chrX:139865725:139865773:[+] chr17:66521912:66521953:[+] nonBSJ supported CDS

circRNA 5':UAGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCU-UCCAG 3'


            ||||| ||||:| ||: :||||| :||| || || :|||


target  3': UCAAG-AGGUUUCG--AGGGA-GGAAGG--GGUU-GUGACCAACGGGUA 5'

 -27.10 22 RIC-seq
chrX:139865727:139865773:[+] chr17:66521912:66521951:[+] nonBSJ supported CDS

circRNA 5':GUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCU-UCCAG 3'


            ||| ||||:| ||: :||||| :||| || || :|||


target  3': AAG-AGGUUUCG--AGGGA-GGAAGG--GGUU-GUGACCAACGGGUA 5'

 -22.80 1 RIC-seq
chrX:139865780:139865800:[+] chr17:66521924:66521949:[+] nonBSJ supported CDS

circRNA 5':AUCCAGG---UCUUCCAG--UCAAUC 3'


            ||||:: :|:||| :|||:


target  3':GAGGUUUCGAGGGAGGAAGGGGUUGU 5'

 -13.80 1 RIC-seq
chrX:139866758:139866787:[+] chr17:66523980:66524007:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCAACGUCUCCAGUGUGCUGAUCU 3'


            ||||||| ||| ||||||||| :|


target  3':GUAGAAGGCGAAAGA-GUCACACGAAGGG 5'

 -29.40 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:66521912:66521944:[+] target 1075863 chr17:66521933-66521934 A>AG Carney_complex,_type_1 ClinVar
chr17:66521912:66521951:[+] target 1075863 chr17:66521933-66521934 A>AG Carney_complex,_type_1 ClinVar
chr17:66521912:66521953:[+] target 1075863 chr17:66521933-66521934 A>AG Carney_complex,_type_1 ClinVar
chr17:66521924:66521949:[+] target 1075863 chr17:66521933-66521934 A>AG Carney_complex,_type_1 ClinVar
chr17:66523980:66524007:[+] target 2736638 chr17:66523987-66523988 A>G Carney_complex,_type_1 ClinVar
chr17:66523980:66524007:[+] target 1368681 chr17:66523989-66523990 A>AC Carney_complex,_type_1 ClinVar
chrX:139865890:139865909:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC