Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866305:139866324:[+] chr17:66527657:66527676:[+] nonBSJ supported 3UTR

circRNA 5': CUCAAAUC-CAUAGCUUCCGA 3'


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target  3':AGGUUUUAGAGUA-CG-GGGUC 5'

 -11.90 2 RIC-seq
chrX:139865726:139865754:[+] chr17:66523999:66524019:[+] nonBSJ supported CDS

circRNA 5': AGUUCUUCCAGAAAAAUCUAGAUCUUCCA 3'


            |:|||:|| || |||||||


target  3':CUUAAGGAGU---------AUGUAGAAGGC 5'

 -15.30 1 RIC-seq
chrX:139865726:139865772:[+] chr17:66523980:66524019:[+] nonBSJ supported CDS

circRNA 5': AGUUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAA-UCAGUGU-CUUCCA 3'


            |:|||:|| || ||||||| |: ||||||| |||||


target  3':CUUAAGGAGU---------AUGUAGAAGG-CGAAAGAGUCACACGAAGGG 5'

 -33.60 1 RIC-seq
chrX:139865970:139865989:[+] chr17:66522013:66522034:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCA-GAAAAUCCAU 3'


            |||||: || :|||:


target  3':GACAGAGCCAGCUACGGGGUGU 5'

 -11.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:66522013:66522034:[+] target 575134 chr17:66522016-66522017 G>A Carney_complex,_type_1 ClinVar
chr17:66522013:66522034:[+] target 41391 chr17:66522027-66522028 C>T Carney_complex,_type_1|not_provided|Carney_complex ClinVar
chr17:66523980:66524019:[+] target 2736638 chr17:66523987-66523988 A>G Carney_complex,_type_1 ClinVar
chr17:66523980:66524019:[+] target 1368681 chr17:66523989-66523990 A>AC Carney_complex,_type_1 ClinVar
chrX:139866305:139866324:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC