Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865935:139865972:[+] chr17:62541940:62541985:[-] nonBSJ supported 3UTR

circRNA 5':UGUCU--------UCC-UGAAGAUCCACGUC-UUCCAGA--AAAUCCAUG 3'


            |||: ||| ||||| ||| ||||| |||||||:


target  3':UCAGGACCCAUUUAGGAACUUCGAA---CAGUAAGGUGUCGUUUAGGUG 5'

 -27.50 1 RIC-seq
chrX:139865935:139865974:[+] chr17:62541940:62541988:[-] nonBSJ supported 3UTR

circRNA 5':UGUCU--------UCC-UGAAGAUCCACGUC-UUCCAGA--AAAUCCAUGUC 3'


            |||: ||| ||||| ||| ||||| |||||||::|


target  3':UCAGGACCCAUUUAGGAACUUCGAA---CAGUAAGGUGUCGUUUAGGUGUAC 5'

 -28.50 7 RIC-seq
chrX:139865935:139865978:[+] chr17:62541940:62541992:[-] nonBSJ supported 3UTR

circRNA 5':UGUCU--------UCC-UGAAGAUCCACGUC-UUCCAGA--AAAUCCAUGUC-UUCC 3'


            |||: ||| ||||| ||| ||||| |||||||::| |||


target  3':UCAGGACCCAUUUAGGAACUUCGAA---CAGUAAGGUGUCGUUUAGGUGUACAAAG 5'

 -28.80 1 RIC-seq
chrX:139865935:139865978:[+] chr17:62541940:62541993:[-] nonBSJ supported 3UTR

circRNA 5':UGUCU--------UCC-UGAAGAUCCACGUC-UUCCAGA--AAAUCCAUGUC-UUCC 3'


            |||: ||| ||||| ||| ||||| |||||||::| |||


target  3':UCAGGACCCAUUUAGGAACUUCGAA---CAGUAAGGUGUCGUUUAGGUGUACAAAGA 5'

 -29.00 56 RIC-seq
chrX:139865939:139865978:[+] chr17:62541941:62541992:[-] nonBSJ supported 3UTR

circRNA 5':UUCCUGA--AGAUCCAC-------GUC-UUCCAGA--AAAUCCAUGUC-UUCC 3'


            ||||| |:|||| ||| ||||| |||||||::| |||


target  3':CAGGACCCAUUUAGGAACUUCGAACAGUAAGGUGUCGUUUAGGUGUACAAAG 5'

 -28.70 1 RIC-seq
chrX:139866215:139866243:[+] chr17:62538787:62538816:[-] nonBSJ supported Exon

circRNA 5':AGGAAAU-CCGUGU-CUUCCAGCAAGUCCAC 3'


            |||| || ||:|||:| |:||||


target  3':ACCUUGUCGGAGAUUGAGGGUUG-UUAGGUU 5'

 -24.30 19 RIC-seq
chrX:139866311:139866331:[+] chr17:62538794:62538815:[-] nonBSJ supported Exon

circRNA 5':UCCA-UAGCUUCCGAAAAAUCC 3'


            || ||:||:||:| |||||


target  3':CGGAGAUUGAGGGUUG-UUAGGU 5'

 -18.20 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866311:139866331:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC