Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866012:139866029:[+]	chr17:41180725:41180740:[+]	nonBSJ supported	3UTR	circRNA 5':UUCCAGAAAAUCCACGUC 3' \|\|\| \|\|\|\| :\| target 3':CAGGGAGU---GGUGGGGA 5'	-9.50	1	RIC-seq
chrX:139866284:139866322:[+]	chr17:41180940:41180968:[+]	nonBSJ supported	3UTR	circRNA 5':UCCAGAAAAUCCUUGUCUUCCCUCAAAUCCAUA-GCUUCC 3' \|\|\|\| \|\|\|\|\|\|\| :\|\|\|: \|\|::\| target 3':UGGUC-----------GAAGGGAUUGCGGGUGGACGGGGU 5'	-24.20	2	RIC-seq
chrX:139866535:139866552:[+]	chr17:41180725:41180740:[+]	nonBSJ supported	3UTR	circRNA 5':UUCCAGAAAAUCCACGUC 3' \|\|\| \|\|\|\| :\| target 3':CAGGGAGU---GGUGGGGA 5'	-9.50	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr17:41180725:41180740:[+]	target	-	chr17:41180729-41180730	G>T	LICA-CN	ICGC
chrX:139866284:139866322:[+]	circRNA	-	chrX:139866318-139866319	C>T	BTCA-JP	ICGC