Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865529:139865549:[+] chr17:48272801:48272818:[-] nonBSJ supported CDS

circRNA 5':UCUUCCAGCAAAUCCAGUCUU 3'


            |:| |||| |||| ||


target  3':UGGAAAUCGU---GGUCCGAC 5'

 -10.10 2 RIC-seq
chrX:139866312:139866351:[+] chr17:48272081:48272119:[-] nonBSJ supported CDS

circRNA 5':CCAUAGCUU-CCGAAAAAUCCAGGUCUUCCAGGAAAUCCGU 3'


            ||: |||: ||: ||| ||: |||| ||||


target  3': GUG-CGAGCGGUCCCCCAGGCCCGUCCGGUCACCCAGGCC 5'

 -25.50 1 RIC-seq
chrX:139866312:139866353:[+] chr17:48272081:48272122:[-] nonBSJ supported CDS

circRNA 5':CCAUAGCUU-CCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGU 3'


            ||: |||: ||: ||| ||: |||| |||| ||


target  3': GUG-CGAGCGGUCCCCCAGGCCCGUCCGGUCACCCAGGCCCAA 5'

 -25.90 1 RIC-seq
chrX:139866647:139866678:[+] chr17:48263240:48263270:[-] nonBSJ supported CDS

circRNA 5':AGCA--UCUGCUCGUCUUCCAACAUCUCCACGUC 3'


            || |||||| |||: |||||:


target  3':ACGGUCAGACGACCAGGUACAUCC---GGUGCGA 5'

 -23.10 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:48263240:48263270:[-] target 2851471 chr17:48263252-48263253 G>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2041730 chr17:48272081-48272082 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2736624 chr17:48272081-48272082 C>T Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2704014 chr17:48272087-48272088 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 863945 chr17:48272089-48272090 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2715318 chr17:48272090-48272091 C>T Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2768815 chr17:48272091-48272092 A>AG Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 1074716 chr17:48272091-48272092 AG>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 3649548 chr17:48272099-48272100 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2094263 chr17:48272099-48272100 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2748687 chr17:48272104-48272105 AG>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 1391888 chr17:48272115-48272116 T>TCC Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 1803195 chr17:48272116-48272117 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2751675 chr17:48272117-48272118 C>CG Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272119:[-] target 2579137 chr17:48272117-48272118 C>T Osteogenesis_imperfecta|not_provided ClinVar
chr17:48272081:48272122:[-] target 2041730 chr17:48272081-48272082 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2736624 chr17:48272081-48272082 C>T Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2704014 chr17:48272087-48272088 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 863945 chr17:48272089-48272090 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2715318 chr17:48272090-48272091 C>T Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2768815 chr17:48272091-48272092 A>AG Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 1074716 chr17:48272091-48272092 AG>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 3649548 chr17:48272099-48272100 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2094263 chr17:48272099-48272100 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2748687 chr17:48272104-48272105 AG>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 1391888 chr17:48272115-48272116 T>TCC Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 1803195 chr17:48272116-48272117 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2751675 chr17:48272117-48272118 C>CG Osteogenesis_imperfecta_type_I ClinVar
chr17:48272081:48272122:[-] target 2579137 chr17:48272117-48272118 C>T Osteogenesis_imperfecta|not_provided ClinVar
chr17:48272801:48272818:[-] target 3722878 chr17:48272802-48272803 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272801:48272818:[-] target 664505 chr17:48272803-48272804 C>A Osteogenesis_imperfecta_type_I ClinVar
chr17:48272801:48272818:[-] target 1685647 chr17:48272803-48272804 C>G Infantile_cortical_hyperostosis ClinVar
chr17:48272801:48272818:[-] target 2695001 chr17:48272811-48272812 C>G Osteogenesis_imperfecta_type_I ClinVar
chr17:48272801:48272818:[-] target 2763973 chr17:48272815-48272816 G>GC Osteogenesis_imperfecta_type_I ClinVar
chr17:48272801:48272818:[-] target 2017357 chr17:48272815-48272816 G>GCTGT Osteogenesis_imperfecta_type_I ClinVar
chr17:48272801:48272818:[-] target 1453111 chr17:48272816-48272817 C>CTAAAGG Osteogenesis_imperfecta_type_I ClinVar
chrX:139866312:139866351:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866312:139866353:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC