Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865655:139865680:[+] chr17:62500412:62500437:[-] nonBSJ supported 5UTR

circRNA 5':AUCUUCCAGCUAA-UCCAUGUCUUCCA 3'


            ||||| ||||: |||| |


target  3':AAGAAGACAUACAAAGGUGGAGAACG 5'

 -15.60 1 RIC-seq
chrX:139865367:139865403:[+] chr17:62499551:62499614:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACA-ACUCCG----GGUCUU---------CCAGC-------------GACUUCAAGUC 3'


            |||||| || ||||:: ||| | |||||||||:


target  3':AGAGGUUUAGUGCAUAAACACCAGGGAAUCCUCGUGGUGGCAUCUAUGUUCAUCUGAAGUUCGC 5'

 -25.20 2 RIC-seq
chrX:139865396:139865408:[+] chr17:62499430:62499442:[-] nonBSJ supported CDS

circRNA 5':UUCAAGUCUUCCA 3'


            || |||||||||


target  3':UAG-UCAGAAGGUC 5'

 -14.00 2 RIC-seq
chrX:139865557:139865621:[+] chr17:62499101:62499169:[-] nonBSJ supported CDS

circRNA 5':UUACU-GG-UCUUC--CACCA-----------AAUCCAGAUCUUCCAGGAAAAUCCACGUCUUCCAGGAAAUCCAUGUCU 3'


            |||| :| || ||||| ||| || |||| |||||| :|||| ||| || |||||


target  3':CGUGAGUCAAGUUCACGUGGUUACAAAUAUACUUAUAUC-AGAAAGUCCUU-------UAGAA-GUCGUUCG---ACAGAA 5'

 -27.90 1 RIC-seq
chrX:139865704:139865758:[+] chr17:62499410:62499467:[-] nonBSJ supported CDS

circRNA 5':AUCCA-AGUCUUCC-AGUAAAUCUAGUUCUUCCAGAAA----AAUCUAGAUCUUCCAGUCA 3'


            |||| | ||| ||| |||| || |||||||| ||| :|||| ||||| |


target  3':AAGGUGUGAGAUUUUUCAGUUAG-UC-AGAAGGUCCACAACGUUAUGUCUA-AAGGUGUGG 5'

 -32.30 1 RIC-seq
chrX:139865710:139865758:[+] chr17:62499392:62499437:[-] nonBSJ supported CDS

circRNA 5':GUCUUC-CAGUAAAUCUAGUUCUUCCAGAAAAAUCUAGA---UCUUCCAGUCA 3'


            ||||| ||| ||| ||||| ||||:| || |||||


target  3':AAGAAGAGUCUAAC----CAAAAAGGUGUG---AGAUUUUUCAGUUAGUCAGA 5'

 -24.30 1 RIC-seq
chrX:139865824:139865847:[+] chr17:62496385:62496401:[-] nonBSJ supported CDS

circRNA 5':GGUCUUCCAGUCAGUCAGUGUCUU 3'


            |:|: ||| |||:|||


target  3':ACGGGC-GUC------UCAUAGAC 5'

 -12.10 1 RIC-seq
chrX:139866119:139866145:[+] chr17:62499393:62499443:[-] nonBSJ supported CDS

circRNA 5': CUUC-CAA--UGGCC--UCCA------------------GGUCUUCCAGA 3'


            |||| || ||| |||| :|||||||||


target  3':AGAAGAGUCUAACCAAAAAGGUGUGAGAUUUUUCAGUUAGUCAGAAGGUCC 5'

 -24.20 2 RIC-seq
chrX:139866690:139866739:[+] chr17:62497377:62497434:[-] nonBSJ supported Intron

circRNA 5':CUGUGUCUUCCA--------------GCAUCUUCAUGUCUUCCAACAACUACCC-AGU-CUUCCAU 3'


            | ||||::||| ||| || |||||: ||| | ||: ||||||


target  3':UGGACAGGGGGUUUUCAACAAAAAUACGU-GAC--ACAGAGCA-----GAUCCGUUCGCGAAGGUU 5'

 -27.00 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:62499551:62499614:[-] target - chr17:62499579-62499580 A>G BTCA-JP ICGC