Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866530:139866589:[+] chr17:28791738:28791798:[+] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGAAAAUCCACGU-CUUCCAGAAAAUAUAUGUCUUCCAACUAAGCU-----ACGUCU 3'


            ||||| |||| ||: | |||| |||: ||:||


target  3':CACAGACAAAG---UAGGACCUUGAGUACCGAAUCCUCCCUGAAGAACC--UCGGCCAUCUGUAGU 5'

 -16.20 5 RIC-seq
chrX:139866567:139866596:[+] chr17:28791777:28791807:[+] nonBSJ supported CDS

circRNA 5': UGUCUUCCAACUAAGCUACGUCUUCCAACA 3'


            | ||||| |:||:| |||


target  3':AGGAGAAGUCACAGACAAAGUAGGACCUUGA 5'

 -11.00 5 RIC-seq
chrX:139866681:139866696:[+] chr17:28758853:28758868:[+] nonBSJ supported CDS

circRNA 5':CCAGCAUC-UCUGUGUC 3'


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target  3':UGUCGUAGUAGAC-CAC 5'

 -16.80 26 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:28791738:28791798:[+] target - chr17:28791784-28791785 G>T LICA-CN ICGC
chr17:28791777:28791807:[+] target - chr17:28791784-28791785 G>T LICA-CN ICGC
chrX:139866567:139866596:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC