Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865811:139865835:[+] chr17:57148247:57148272:[-] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCC--AGG-UCUUCCAGUC 3'


            |||| ||| ||| |||: ||:


target  3':ACUUUG--UAGUAUUCCUAGAGACUCGA 5'

 -10.00 1 RIC-seq
chrX:139865811:139865835:[+] chr17:57148248:57148272:[-] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCC--AGG-UCUUCCAGUC 3'


            |||| ||| ||| |||: ||:


target  3': CUUUG--UAGUAUUCCUAGAGACUCGA 5'

 -8.70 14 RIC-seq
chrX:139865811:139865846:[+] chr17:57148248:57148283:[-] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCC--AGG-UCUUCCAGUCAGUCAGUGUCU 3'


            |||| ||| ||| |||: ||: :|:||


target  3': CUUUG--UAGUAUUCCUAGAGACUCGAGAAUCUAUAGU 5'

 -11.80 1 RIC-seq
chrX:139865811:139865849:[+] chr17:57148248:57148286:[-] nonBSJ supported CDS

circRNA 5':AGAAAGAAAUCC--AGG-UCUUCCAGUCAGUCAGUGUCUUCC 3'


            |||| ||| ||| |||: ||: :|:|| |


target  3': CUUUG--UAGUAUUCCUAGAGACUCGAGAAUCUAUAGUUGA 5'

 -12.20 18 RIC-seq