Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865771:139865798:[+] chr17:56597757:56597786:[-] nonBSJ supported 3UTR

circRNA 5':CAGAA--AGAAAUCCAGGUCUUCCAGUCAA 3'


            ||| |:| ||||||| || ||:||


target  3':CUCUAAAUUUAUAGGUCCCGACUUUCGGUC 5'

 -18.00 18 RIC-seq
chrX:139866619:139866642:[+] chr17:56597726:56597747:[-] nonBSJ supported 3UTR

circRNA 5':CAGGUCUUCCAGCAUCUCCAGGGC 3'


            ||| || |||| ||||:


target  3':CUCCCC--GGCCGUACCUGUCCUU 5'

 -14.10 34 RIC-seq
chrX:139865414:139865459:[+] chr17:56604136:56604184:[-] nonBSJ supported 5UTR

circRNA 5':CUCA-AGGUCUU---CCA-GAUAAUC--CUGAGCUUCCAGAAAAUCCACAUCU 3'


            ||| ||| || || || ||||:| ||||| || ||||


target  3':CAGUCUCCUGACCCCGGCGCUCCCCCCAGACUUG-AGGUCC---AGUAGUAGU 5'

 -22.50 6 RIC-seq
chrX:139865401:139865444:[+] chr17:56598481:56598521:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGC-UUCC 3'


            |||:|| || |||:||| ||| :|||| | ||||


target  3':ACAGGAGUCGA--AGUGUUUCAGC--GUCAC--GGGACCCAAAAGGU 5'

 -26.00 1 RIC-seq
chrX:139865401:139865445:[+] chr17:56598481:56598522:[-] nonBSJ supported CDS

circRNA 5': GUCUUCCAAUAAUCUCAAGGUCUUCCAGAUAAUCCUGAGC-UUCCA 3'


            |||:|| || |||:||| ||| :|||| | |||||


target  3':ACAGGAGUCGA--AGUGUUUCAGC--GUCAC--GGGACCCAAAAGGUG 5'

 -27.80 6 RIC-seq
chrX:139865432:139865448:[+] chr17:56598482:56598499:[-] nonBSJ supported CDS

circRNA 5':AUCCUGAGCUUC-CAGAA 3'


            |||| |||||| ||:|


target  3':CAGGAGUCGAAGUGUUUC 5'

 -19.40 15 RIC-seq
chrX:139866318:139866341:[+] chr17:56598432:56598462:[-] nonBSJ supported CDS

circRNA 5': CUUCCGAAAA--AUCC---AGGUCUUCCA 3'


            ||:||| |||| |||||:| ||


target  3':AGAGGGCACAGUGUAGGAAGUCCAGGACGUA 5'

 -20.70 5 RIC-seq
chrX:139866318:139866371:[+] chr17:56598364:56598415:[-] nonBSJ supported CDS

circRNA 5':CUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUG-UCUUCCAGCAAAU--CCACGU 3'


            ||||| ||| |: ||||| |:|| ||| ||| || ||


target  3':UAAGGCA----AGGAAGUGGUGGUCCGCCCAGUACGAGACCUACGUGACACGG-GCC 5'

 -27.70 5 RIC-seq
chrX:139866751:139866795:[+] chr17:56598442:56598497:[-] nonBSJ supported CDS

circRNA 5': AUAUCCAU---GUCUUCCA-------ACGUCUCCAGU---GUGCUGAUCUUCUGACAU 3'


            |:|||| |||:| || |||| ||||: || || | |||| |||


target  3':GUGUAGGAAGUCCAGGACGUACACCCAUGCAU-GGUCGUAACAGGAGUCGAAG--UGUU 5'

 -26.80 10 RIC-seq
chrX:139865838:139865867:[+] chr17:56598320:56598350:[-] nonBSJ supported Intron

circRNA 5': UCAGUGUCUUCCAGAAAAAUCUACGUCUUC 3'


            || : :|| |||| ||: | ||||


target  3':UAGAGGGGGACGGUCGAAACAGGACC-GAAGA 5'

 -13.40 11 RIC-seq
chrX:139865842:139865866:[+] chr17:56598319:56598344:[-] nonBSJ supported Intron

circRNA 5':UGUCUUCCAGAAAAAUCUACGUCUU 3'


            ||||:|| || |||:|


target  3':CUAGAGGGGGACGGUCGAAACAGGAC 5'

 -12.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:56598364:56598415:[-] target - chr17:56598408-56598409 G>T LICA-CN ICGC
chrX:139866751:139866795:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC