Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866742:139866809:[+] chr17:37457266:37457317:[-] nonBSJ supported CDS

circRNA 5':ACUGGC--UCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGU 3'


            |||| |||| ||| ||: ||||| |:||| |||:|||: ||||


target  3': GACCUUUAGUUUAUC---CAGUUAA--GCGACGGUCA-AUGACG--------GUAGGUCUC---GGUCU 5'

 -30.70 17 RIC-seq
chrX:139866767:139866809:[+] chr17:37457287:37457317:[-] nonBSJ supported CDS

circRNA 5':ACGUCUCCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGU 3'


            ||: ||||| |:||| |||:|||: ||||


target  3':AGCGACGGUCA-AUGACG--------GUAGGUCUC---GGUCU 5'

 -24.40 1 RIC-seq
chrX:139866773:139866826:[+] chr17:37457283:37457314:[-] nonBSJ supported CDS

circRNA 5':CCAGUGUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCCAG-GU 3'


            ||:| :|||| ||||| |||| :|||||| |:


target  3': GUUAAGCGAC---------------------GGUCAAUGACG--GUAGGUCUCGG 5'

 -29.50 13 RIC-seq
chrX:139866778:139866826:[+] chr17:37457287:37457314:[-] nonBSJ supported CDS

circRNA 5':GUGCUGAUCUUCUGACAUUCAGGUCUUCCAGUGUCUGCAAUAUCCAG-GU 3'


            ||||| ||||| |||| :|||||| |:


target  3':AGCGAC---------------------GGUCAAUGACG--GUAGGUCUCGG 5'

 -27.30 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866742:139866809:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866767:139866809:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866773:139866826:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866778:139866826:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC