Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866778:139866809:[+] chr17:35348115:35348145:[+] nonBSJ supported CDS

circRNA 5': GUGCUGAUCUUCUGACA-UUCAGGUCUUCCAGU 3'


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target  3':UCAGUAGUAGUAGUUUCUAAAGA--AGUAGGUU 5'

 -11.20 1 RIC-seq
chrX:139866782:139866811:[+] chr17:35348102:35348130:[+] nonBSJ supported CDS

circRNA 5':UGAUCUUCUGACAUUCAGGUCUUCCAG-UGU 3'


            ||| |||| |||:||:|||:| ||| ||


target  3':UCUA-AAGAA-GUAGGUUCAGGAAGUCUACU 5'

 -23.50 19 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866778:139866809:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC
chrX:139866782:139866811:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC