Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865675:139865695:[+] chr10:35364666:35364686:[-] nonBSJ supported Intron

circRNA 5':CUUCCAGAAAAAUCUGUGUCU 3'


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target  3':AAAGGUCUUUUGUAAUACAGU 5'

 -20.00 2 RIC-seq
chrX:139866588:139866642:[+] chr10:35344745:35344777:[-] nonBSJ supported Intron

circRNA 5':CUUCCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCUUCCAGCAUCUCC-AGGGC 3'


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target  3':AAAGGUU-----------------------GGUACGGAAGGUCGAUUCCUUUCUCC 5'

 -26.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866588:139866642:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC