Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866317:139866344:[+] chr10:27499916:27499944:[-] nonBSJ supported CDS

circRNA 5':GCUUC-CGAAAAAUCCAGGUC-UUCCA-GGA 3'


            |||| ||| |||||||: ||||| ||


target  3':AGAAGUGCU--UUAGGUCUUAAAAGGUACCC 5'

 -24.60 1 RIC-seq
chrX:139866317:139866354:[+] chr10:27499916:27499968:[-] nonBSJ supported CDS

circRNA 5':GCUUC-CGAAAAAUCCAGGUC-UUCCA----------GGAA-----AUCCGUGUC 3'


            |||| ||| |||||||: ||||| |||| |:||: ||


target  3':AGAAGUGCU--UUAGGUCUUAAAAGGUACCCAACUGACCUUACUGGUGGGUUCAU 5'

 -26.40 41 RIC-seq
chrX:139866319:139866354:[+] chr10:27499919:27499968:[-] nonBSJ supported CDS

circRNA 5':UUC-CGAAAAAUCCAGGUC-UUCCA----------GGAA-----AUCCGUGUC 3'


            || ||| |||||||: ||||| |||| |:||: ||


target  3': AGUGCU--UUAGGUCUUAAAAGGUACCCAACUGACCUUACUGGUGGGUUCAU 5'

 -21.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:27499916:27499944:[-] target - chr10:27499922-27499923 C>G BTCA-JP ICGC
chr10:27499916:27499968:[-] target - chr10:27499922-27499923 C>G BTCA-JP ICGC
chr10:27499919:27499968:[-] target - chr10:27499922-27499923 C>G BTCA-JP ICGC
chrX:139866317:139866344:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866317:139866354:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC