5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865336:139865368:[+] | chr10:24896784:24896810:[-] | nonBSJ supported | CDS |
circRNA 5':CCAGGGUUUCCGAUG-GCACCUGUGUCAAGGUCU 3' ||||| ||| ||| :|:||| |:|| target 3':CGUCCCUA----UACACGU---UAUAGUACUAGU 5' |
-21.00 | 1 | RIC-seq |
| chrX:139865348:139865368:[+] | chr10:24896791:24896810:[-] | nonBSJ supported | CDS |
circRNA 5': AUG-GCACCUGUGUCAAGGUCU 3' ||| ||| :|:||| |:|| target 3':AUACACGU---UAUAGUACUAGU 5' |
-13.70 | 1 | RIC-seq |
| chrX:139865412:139865447:[+] | chr10:24874595:24874649:[-] | nonBSJ supported | CDS |
circRNA 5':AUC-UCAAGG----------UCUU--CCAGAUAAU-CCUGA-GCU-UC---CAGA 3' || |||||| ||| ||||| |||| ||| || ||| target 3':GAGAAGUUCCACCCUCCUGAAGACACGGUCUUCACUGGACCCCGAGAGAAAGUCC 5' |
-23.90 | 18 | RIC-seq |
| chrX:139865711:139865733:[+] | chr10:24886899:24886920:[-] | nonBSJ supported | CDS |
circRNA 5': UCUUCCAGUAAAUCUAGUUCUUC 3' ||||| | ||| ||| ||:: target 3':AAGAAGCUGAUUA--AUCUAGGGA 5' |
-9.80 | 1 | RIC-seq |
| chrX:139865722:139865750:[+] | chr10:24886891:24886917:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUA--GUUCUUCCAGAAAAAUCUAGAUCU 3' ||| :|||||| || ||| |||||| target 3':AAGAAAAUAAGAAG--CUGAUUA-AUCUAG 5' |
-14.10 | 1 | RIC-seq |
| chrX:139865722:139865752:[+] | chr10:24886891:24886920:[-] | nonBSJ supported | CDS |
circRNA 5':AUCUA--GUUCUUCCAGAAAAAUCUAGAUCUUC 3' ||| :|||||| || ||| ||||||:: target 3':AAGAAAAUAAGAAG--CUGAUUA-AUCUAGGGA 5' |
-15.70 | 16 | RIC-seq |
| chrX:139865767:139865797:[+] | chr10:24874807:24874838:[-] | nonBSJ supported | CDS |
circRNA 5': CUUCCAGAAAGAAAUCCAG-GUCUUCCAGUCA 3' |||| :|||| ||||: | || target 3':AGAAGACAAAAGAC-GGGUCACAGAGUGAAAGA 5' |
-15.70 | 14 | RIC-seq |
| chrX:139865833:139865872:[+] | chr10:24959273:24959312:[-] | nonBSJ supported | CDS |
circRNA 5':GUCAGUCAGUGUCUUCCAGAAAAAUCUACGUCU--UCCACCA 3' |||| ||||| ||| ||| |||| | target 3':AAGUCUGUCACUAU--GUCAAAGUGAAACAAGAAAAGGUAGA 5' |
-18.70 | 8 | RIC-seq |
| chrX:139865935:139865983:[+] | chr10:24879317:24879365:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCUGAAGAUCC-ACGUCUUCCAGAAAAUCCAU----GUCUUC-CAGAAA 3' |||:|||| ||| ||: |||||| ||||| | | || ||||| target 3': CAGGAGGAAGA--AGGAUGUC-AAGGUCGAC-AGGUAGUCCCUGUAGUGUCUU 5' |
-33.50 | 1 | RIC-seq |
| chrX:139865935:139865987:[+] | chr10:24879317:24879360:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCA--UGUCUUCCAGAAA-AUCC 3' |||:|||| |||||| |||| ||||: ||| ||| target 3': CAGGAGGA-----------AGAAGGAUGUCAAGGUCGACAGGUAGUCCCUGUAGU 5' |
-29.80 | 1 | RIC-seq |
| chrX:139865935:139865989:[+] | chr10:24879317:24879362:[-] | nonBSJ supported | CDS |
circRNA 5':UGUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCA--UGUCUUCCAGAAA-AUC-CAU 3' |||:|||| |||||| |||| ||||: ||| ||| || target 3': CAGGAGGA-----------AGAAGGAUGUCAAGGUCGACAGGUAGUCCCUGUAGUGU 5' |
-30.70 | 22 | RIC-seq |
| chrX:139865936:139865989:[+] | chr10:24879318:24879362:[-] | nonBSJ supported | CDS |
circRNA 5':GUCUUCCUGAAGAUCCACGUCUUCCAGAAAAUCCA--UGUCUUCCAGAAA-AUC-CAU 3' ||:|||| |||||| |||| ||||: ||| ||| || target 3': AGGAGGA-----------AGAAGGAUGUCAAGGUCGACAGGUAGUCCCUGUAGUGU 5' |
-28.20 | 1 | RIC-seq |
| chrX:139866034:139866069:[+] | chr10:24874009:24874042:[-] | nonBSJ supported | CDS |
circRNA 5':CAACAAUCCAAGUCUUCCGGAUAAUUUGGGU-CUUCC 3' ||| ||| || ||| :| |||: :||| |||| target 3':AUUG-UAGUUUGUGAAA-UCAAUUGCUUCCACGAAG 5' |
-13.50 | 13 | RIC-seq |
| chrX:139866038:139866069:[+] | chr10:24874012:24874042:[-] | nonBSJ supported | CDS |
circRNA 5':AAUCCAAGUCUUCCGGAUAAUUUGGGU-CUUCC 3' ||| || ||| :| |||: :||| |||| target 3':GUAGUUUGUGAAA-UCAAUUGCUUCCACGAAG 5' |
-12.40 | 1 | RIC-seq |
| chrX:139866043:139866084:[+] | chr10:24873977:24874016:[-] | nonBSJ supported | CDS |
circRNA 5':AAGU---CUUCCGGAUAAUUUGGGUCUUCCUGAAAAUCU-ACGUCU 3' ||| ||:||:| |||: | ||||| ||:|| target 3':GUCAUUUGAGGGUC-----AACUGA-AAGGAAAAAAGUAUUGUAGU 5' |
-20.40 | 15 | RIC-seq |
| chrX:139866076:139866139:[+] | chr10:24873588:24873660:[-] | nonBSJ supported | CDS |
circRNA 5': UCUACGUCU-------UCCAAAAAAGCCA-UGUCUUC--CAGAAAAUCCACAUCUUCCAAUGGCC-UCCA-GGUCU 3' ||| |||| ||| || ||: |||| || ||| ||| ||:| target 3':AAGAGACAGACCCCUAGAGGCUAAAGAGGAGACGAUUCCAGUCUCCA---UGACCACGCAU-CCGCAAGGGACCGGU 5' |
-22.40 | 16 | RIC-seq |
| chrX:139866094:139866139:[+] | chr10:24873589:24873660:[-] | nonBSJ supported | CDS |
circRNA 5':GCCAUGUCUUCCAGAAAAUCCACA-UCUUC-CAAU------------------------GGCC-UCCA-GGUCU 3' | ||||| || ||| |||:| | ||| ||| ||:| target 3':AGAGACAGACCC-CUAG-AGGCUAAAGAGGAGACGAUUCCAGUCUCCAUGACCACGCAUCCGCAAGGGACCGGU 5' |
-21.20 | 1 | RIC-seq |
| chrX:139866116:139866148:[+] | chr10:24873601:24873638:[-] | nonBSJ supported | CDS |
circRNA 5':CAUCUUCCAAUGG-CCUCC----AGGUCUUCCAGACUA 3' ||||:| |||| ||||| ||| target 3':CUAGAGGCUAAAGAGGAGACGAUUCCAGUCUCCAUGAC 5' |
-17.10 | 1 | RIC-seq |
| Interaction region | CircRNA/target | Mutation ID | Position | Variant | Associated trait | Resource |
| chr10:24873588:24873660:[-] | target | - | chr10:24873645-24873646 | A>G | LINC-JP | ICGC |
| chr10:24873589:24873660:[-] | target | - | chr10:24873645-24873646 | A>G | LINC-JP | ICGC |