Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865380:139865408:[+] chr10:104140342:104140379:[+] nonBSJ supported CDS

circRNA 5': CGGG---UCUUCCAG-----CGACUUCAAGUCUUCCA 3'


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target  3':GGUCCACUAGAGGGUCUCCCGGCUCCCCGGCGGAGGGG 5'

 -27.10 5 RIC-seq
chrX:139865384:139865408:[+] chr10:104140342:104140372:[+] nonBSJ supported CDS

circRNA 5': UCUUCCAG-----CGACUUCAAGUCUUCCA 3'


            |||:|||| ||| |:||:||


target  3':UAGAGGGUCUCCCGGCUCCCCGGCGGAGGGG 5'

 -22.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:104140342:104140372:[+] target - chr10:104140350-104140351 G>A LAML-KR ICGC
chr10:104140342:104140379:[+] target - chr10:104140350-104140351 G>A LAML-KR ICGC