Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866155:139866207:[+] chr10:103436108:103436149:[-] nonBSJ supported CDS

circRNA 5':UCUUC--CAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGC-UUCCAAAAAAUCCGG 3'


            |||| ||||| |:||||: || :||| ::||| |||:|


target  3':UGAAGUCGUCUU----------AGGGGAG---AGCCGUCGCGGGGUCAG--AGGUCA 5'

 -27.40 1 RIC-seq
chrX:139866155:139866217:[+] chr10:103436108:103436149:[-] nonBSJ supported CDS

circRNA 5':UCUUC--CAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCUUCCAAAAAAUCCGGGUCUUCCAGG 3'


            |||| ||||| |:||||: || :||| :|| :||| |||||


target  3':UGAAGUCGUCUU----------AGGGGAG---AGCCGUCGC---------GGGGUCAG-AGGUCA 5'

 -32.30 30 RIC-seq