Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866508:139866530:[+] chr10:73558958:73558995:[+] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCAACCAA---------------GCCA 3'


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target  3':CAGGUGCUAAAGGUCCAUCUGUCCCUAGAGUCGACGGG 5'

 -17.00 1 RIC-seq
chrX:139866508:139866556:[+] chr10:73558938:73558995:[+] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCAACCA------------AGCCAUGUCUUCCAGAAAAUCCACGUCUUCC 3'


            |||||| ||||| ||| ||:|: || ||| ||


target  3':CAGGUGCUAAAGGUCCAUCUGUCCCUAGAGUCG--ACGGGCCCCGCCCCUGG-GCAACAGA 5'

 -25.10 1 RIC-seq
chrX:139866508:139866572:[+] chr10:73558937:73558995:[+] nonBSJ supported CDS

circRNA 5':AUCCACGUCUUCCAACCA------------AGCCAUGUCUUCCAGAAAAUCCACGUCUUCCAGAAAAUAUAUGUCUU 3'


            |||||| ||||| ||| ||:|: || ||| |||||


target  3':CAGGUGCUAAAGGUCCAUCUGUCCCUAGAGUCG--ACGGGCCCCGCCCCUGG-GCA---------------ACAGAC 5'

 -26.30 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr10:73558937:73558995:[+] target 1310877 chr10:73558941-73558942 C>A Autosomal_recessive_nonsyndromic_hearing_loss_12|not_provided|not_specified ClinVar
chr10:73558937:73558995:[+] target 3601583 chr10:73558970-73558971 TC>T Autosomal_recessive_nonsyndromic_hearing_loss_12 ClinVar
chr10:73558938:73558995:[+] target 1310877 chr10:73558941-73558942 C>A Autosomal_recessive_nonsyndromic_hearing_loss_12|not_provided|not_specified ClinVar
chr10:73558938:73558995:[+] target 3601583 chr10:73558970-73558971 TC>T Autosomal_recessive_nonsyndromic_hearing_loss_12 ClinVar
chr10:73558958:73558995:[+] target 3601583 chr10:73558970-73558971 TC>T Autosomal_recessive_nonsyndromic_hearing_loss_12 ClinVar
chr10:73558937:73558995:[+] target - chr10:73558952-73558953 C>T LAML-KR ICGC
chr10:73558938:73558995:[+] target - chr10:73558952-73558953 C>T LAML-KR ICGC