Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865895:139865931:[+] chr10:120820742:120820789:[-] nonBSJ supported CDS

circRNA 5':CACAUC-UUC-CGGAAAAAAUCCAGGU---------CUUCCAGCCAAU 3'


            || || :|| |:|| ||| |||| |||||||


target  3':CUG-AGCGAGUGUCUCAAAAUUACCCAAUUUAAGAUGAAGUUCGGUUAA 5'

 -18.90 15 RIC-seq
chrX:139865912:139865931:[+] chr10:120820748:120820789:[-] nonBSJ supported CDS

circRNA 5':AUC-CAG-GU-------------------CUUCCAGCCAAU 3'


            || ||| || |||| |||||||


target  3':GAGUGUCUCAAAAUUACCCAAUUUAAGAUGAAGUUCGGUUAA 5'

 -14.80 12 RIC-seq
chrX:139866690:139866714:[+] chr10:120833358:120833383:[-] nonBSJ supported CDS

circRNA 5':CUGUGUCUUCCAGCAUCUUC-AUGUC 3'


            |||:|||| ||| ||| ||||


target  3':CACAUAGAAAACGGUACAAGAUACAA 5'

 -14.70 1 RIC-seq
chrX:139866690:139866714:[+] chr10:120833359:120833383:[-] nonBSJ supported CDS

circRNA 5':CUGUGUCUUCCAGCAUCUUC-AUGUC 3'


            |||:|||| ||| ||| ||||


target  3': ACAUAGAAAACGGUACAAGAUACAA 5'

 -14.10 5 RIC-seq
chrX:139866691:139866714:[+] chr10:120833360:120833383:[-] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCAGCAUCUUC-AUGUC 3'


            ||:|||| ||| ||| ||||


target  3': CAUAGAAAACGGUACAAGAUACAA 5'

 -12.40 9 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865895:139865931:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC